Transcript: lnc-ZNF280D-3:4

Basic information

LNCipedia transcript ID: lnc-ZNF280D-3:4 
LNCipedia gene ID: lnc-ZNF280D-3
Ensembl Gene ID: ENSG00000285331
Ensembl Transcript ID: ENST00000559920
Location (hg19): chr15:57151866-57209846
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2284 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508706; ENST00000559920.1; RP11-323F24.1-003; OTTHUMT00000419452.1; ENST00000559920.5
Alternative gene names: ENSG00000248500; ENSG00000259484.1; RP11-323F24.1; OTTHUMG00000172613.1; ENSG00000285331.1; AC010999.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8534 non-coding 
CPAT coding probability 24.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF280D-3:4 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MNS1-1:2
3.1 lnc-MNS1-3:3
4.0 lnc-MNS1-3:3
4.1 lnc-MNS1-3:3
5.0 lnc-MNS1-3:3
5.1 lnc-DNAAF4-38:3
5.2 lnc-ZNF280D-3:4