Transcript: lnc-ZNF33A-13:2

Basic information

LNCipedia transcript ID: lnc-ZNF33A-13:2 
LNCipedia gene ID: lnc-ZNF33A-13
Ensembl Gene ID: ENSG00000234918
Ensembl Transcript ID: ENST00000436077
Location (hg19): chr10:37529815-37530977
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 335 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436077; ENST00000436077.1; RP11-20F24.2-001; OTTHUMT00000047593.1
Alternative gene names: ENSG00000234918; RP11-20F24.2; ENSG00000234918.1; OTTHUMG00000017969.1; AL157387.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.5672 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF33A-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD30A-1:1
3.1 lnc-ANKRD30A-1:1
4.0 lnc-ANKRD30A-1:1
4.1 lnc-ANKRD30A-1:1
5.0 lnc-ANKRD30A-1:1
5.1 lnc-NPY4R2-138:2
5.2 lnc-ZNF33A-13:2