Transcript: lnc-ZNF404-1:3

Basic information

LNCipedia transcript ID: lnc-ZNF404-1:3 
LNCipedia gene ID: lnc-ZNF404-1
Location (hg19): chr19:44387820-44405949
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1232 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027759; NONHSAT066637
Alternative gene names: XLOC_013350; linc-ZNF404


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2666 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF404-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF45-1:3
3.1 lnc-ZNF404-1:3
4.0 lnc-ZNF404-1:3
4.1 lnc-ZNF404-1:3
5.0 lnc-ZNF404-1:3
5.1 lnc-GPR4-41:5
5.2 lnc-ZNF404-1:3