Transcript: lnc-ZNF423-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF423-2:1 
LNCipedia gene ID: lnc-ZNF423-2
Ensembl Gene ID: ENSG00000261751
Ensembl Transcript ID: ENST00000563124
Location (hg19): chr16:49954641-49958065
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2085 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00024301; ENST00000563124.1; RP11-305A4.3-001; OTTHUMT00000423128.1; NONHSAT142386
Alternative gene names: XLOC_011930; linc-ZNF423-2; ENSG00000261751.1; RP11-305A4.3; OTTHUMG00000173446.1; AC007603.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.458 non-coding 
CPAT coding probability 24.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF423-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF423-2:1
3.1 lnc-ZNF423-2:1
4.0 lnc-ZNF423-2:1
4.1 lnc-ZNF423-2:1
5.0 lnc-ZNF423-2:1
5.1 lnc-CFAP20-145:1
5.2 lnc-ZNF423-2:1