Transcript: lnc-ZNF438-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF438-1:4 
LNCipedia gene ID: lnc-ZNF438-1
Location (hg19): chr10:31645464-31648030
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2212 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_2282_NR_024284
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.4412 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF438-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL117340.1-1:2
4.0 lnc-AL117340.1-1:2
4.1 lnc-AL117340.1-1:2
5.0 lnc-AL117340.1-1:2
5.1 lnc-MPP7-71:1
5.2 lnc-ZNF438-1:4