Transcript: lnc-ZNF438-4:2

Basic information

LNCipedia transcript ID: lnc-ZNF438-4:2 
LNCipedia gene ID: lnc-ZNF438-4
Location (hg19): chr10:31650356-31652937
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2582 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000359888.2
Alternative gene names: ENSG00000196960.3; RP11-192P3.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 205.0592 coding 
CPAT coding probability 99.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF438-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL117340.1-3:2
4.0 lnc-AL117340.1-3:2
4.1 lnc-AL117340.1-3:2
5.0 lnc-AL117340.1-3:2
5.1 lnc-MPP7-72:2
5.2 lnc-ZNF438-4:2