Transcript: lnc-ZNF485-68:23

Basic information

LNCipedia transcript ID: lnc-ZNF485-68:23 
LNCipedia gene ID: lnc-ZNF485-68
Ensembl Gene ID: ENSG00000227029
Ensembl Transcript ID: ENST00000446107
Location (hg19): chr10:44407892-44409684
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017822; ENST00000446107; ENST00000446107.1; RP11-168P8.3-001; OTTHUMT00000047733.1; NONHSAT013012
Alternative gene names: XLOC_008473; linc-TMEM72-2; ENSG00000227029; RP11-168P8.3; ENSG00000227029.1; OTTHUMG00000018050.1; bA168P8.1; AL139237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.3393 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF485-68:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf136-1:10
3.1 lnc-C10orf136-1:10
4.0 lnc-C10orf136-1:10
4.1 LINC00619:20
5.0 LINC00619:20
5.1 lnc-NPY4R2-68:23
5.2 lnc-ZNF485-68:23