Transcript: lnc-ZNF503-1:2

Basic information

LNCipedia transcript ID: lnc-ZNF503-1:2 
LNCipedia gene ID: lnc-ZNF503-1
Ensembl Gene ID: ENSG00000270087
Ensembl Transcript ID: ENST00000445450
Location (hg19): chr10:77039489-77043104
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017998; NONHSAT014094; ENST00000445450.1
Alternative gene names: XLOC_008859; linc-COMTD1; ENSG00000270087.1; RP11-399K21.11; ENSG00000270087.5; AC010997.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.8245 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF503-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COMTD1-1:2
3.1 lnc-ZNF503-1:2
4.0 lnc-ZNF503-1:2
4.1 lnc-ZNF503-1:2
5.0 lnc-ZNF503-1:2
5.1 lnc-VSIR-57:8
5.2 lnc-ZNF503-1:2