Transcript: lnc-ZNF516-9:1

Basic information

LNCipedia transcript ID: lnc-ZNF516-9:1 
LNCipedia gene ID: lnc-ZNF516-9
Ensembl Gene ID: ENSG00000264108
Ensembl Transcript ID: ENST00000579775
Location (hg19): chr18:73720073-73727816
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 211 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579775.1; RP11-357H3.1-001; OTTHUMT00000444922.1; NONHSAT059902
Alternative gene names: ENSG00000264108.1; RP11-357H3.1; OTTHUMG00000179129.1; AC090457.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF516-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF516-9:1
4.0 lnc-ZNF516-9:1
4.1 lnc-ZNF516-9:1
5.0 lnc-ZNF516-9:1
5.1 lnc-PQLC1-37:1
5.2 lnc-ZNF516-9:1