Transcript: lnc-ZNF546-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF546-1:4 
LNCipedia gene ID: lnc-ZNF546-1
Location (hg19): chr19:40526292-40526948
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 657 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT066343; ENST00000593658.1
Alternative gene names: ENSG00000268166.1; CTC-471F3.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.4853 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF546-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMC4-1:1
4.0 lnc-PSMC4-1:1
4.1 lnc-PSMC4-1:1
5.0 lnc-PSMC4-1:1
5.1 lnc-MAP3K10-10:1
5.2 lnc-ZNF546-1:4