Transcript: lnc-ZNF608-3:1

Basic information

LNCipedia transcript ID: lnc-ZNF608-3:1 
LNCipedia gene ID: lnc-ZNF608-3
Ensembl Gene ID: ENSG00000251214
Ensembl Transcript ID: ENST00000513422
Location (hg19): chr5:123795605-123796242
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 638 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513422; ENST00000513422.1; CTD-2308B18.1-001; OTTHUMT00000371291.1; NONHSAT103523
Alternative gene names: ENSG00000251214; CTD-2308B18.1; ENSG00000251214.1; OTTHUMG00000162990.1; AC025465.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -402.3575 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF608-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF608-3:1
3.1 lnc-ZNF608-3:1
4.0 lnc-ZNF608-3:1
4.1 lnc-ZNF608-3:1
5.0 lnc-ZNF608-3:1
5.1 lnc-LOX-27:1
5.2 lnc-ZNF608-3:1