Transcript: lnc-ZNF621-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF621-2:1 
LNCipedia gene ID: lnc-ZNF621-2
Ensembl Gene ID: ENSG00000231873
Ensembl Transcript ID: ENST00000412811
Location (hg19): chr3:40807698-40904117
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005514; ENST00000412811; ENST00000412811.1; RP11-761N21.1-001; OTTHUMT00000342724.1; NONHSAT089182
Alternative gene names: XLOC_002622; linc-CTNNB1-2; ENSG00000231873; RP11-761N21.1; ENSG00000231873.1; OTTHUMG00000156011.1; AC099560.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.0407 non-coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF621-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF621-2:1
3.1 lnc-ZNF621-2:1
4.0 lnc-ZNF621-2:1
4.1 lnc-ZNF621-2:1
5.0 lnc-ZNF621-2:1
5.1 lnc-KLHL40-51:1
5.2 lnc-ZNF621-2:1