Transcript: lnc-ZNF639-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF639-1:1 
LNCipedia gene ID: lnc-ZNF639-1
Ensembl Gene ID: ENSG00000260743
Ensembl Transcript ID: ENST00000569932
Location (hg19): chr3:179058110-179059675
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1566 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569932.1; RP11-255C15.3-001; OTTHUMT00000431175.1; NONHSAT093391
Alternative gene names: ENSG00000260743.1; RP11-255C15.3; OTTHUMG00000175849.1; AC007823.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3043 non-coding 
CPAT coding probability 2.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF639-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF639-1:1
4.0 lnc-ZNF639-1:1
4.1 lnc-ZNF639-1:1
5.0 lnc-ZNF639-1:1
5.1 lnc-PIK3CA-1:4
5.2 lnc-ZNF639-1:1