Transcript: lnc-ZNF678-1:5

Basic information

LNCipedia transcript ID: lnc-ZNF678-1:5 
LNCipedia gene ID: lnc-ZNF678-1
Location (hg19): chr1:227931532-227934892
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1708 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413347.1; SNAP47-AS1-001; OTTHUMT00000098816.1; NONHSAT009946
Alternative gene names: ENSG00000230005.1; SNAP47-AS1; OTTHUMG00000041233.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.9267 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF678-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS38-1:1
4.0 lnc-PRSS38-1:1
4.1 lnc-PRSS38-1:1
5.0 lnc-PRSS38-1:1
5.1 lnc-ZNF678-1:4
5.2 lnc-ZNF678-1:5