Transcript: lnc-ZNF681-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF681-2:1 
LNCipedia gene ID: lnc-ZNF681-2
Ensembl Gene ID: ENSG00000269289
Ensembl Transcript ID: ENST00000596326
Location (hg19): chr19:24101883-24140732
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1585 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000300996; NONHSAT063943; ENST00000596326.1; ENST00000596326.5
Alternative gene names: ENSG00000104777; ENSG00000269289.1; CTB-92J24.3; ENSG00000269289.5; AC011503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2717 non-coding 
CPAT coding probability 21.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF681-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF681-2:1
3.1 lnc-ZNF681-2:1
4.0 lnc-ZNF681-2:1
4.1 lnc-ZNF681-2:1
5.0 lnc-ZNF681-2:1
5.1 lnc-PALM3-242:2
5.2 lnc-ZNF681-2:1