Transcript: lnc-ZNF705D-2:21

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:21 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg19): chr8:11973284-11974137
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000526690.1; FAM66D-002; OTTHUMT00000383295.1; NONHSAT125113
Alternative gene names: ENSG00000255052.2; FAM66D; OTTHUMG00000165269.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 134.8868 coding 
CPAT coding probability 68.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:21 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-1:1
4.0 lnc-AC130352.1-2:3
4.1 lnc-AC130352.1-2:3
5.0 lnc-AC130352.1-2:3
5.1 lnc-DEFB106A-82:2
5.2 lnc-ZNF705D-2:21