Transcript: lnc-ZNF705D-2:28

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:28 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg19): chr8:11979521-12008790
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 5
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1306:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.6778 non-coding 
CPAT coding probability 6.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF705D-2:28 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC130352.1-2:10
4.1 lnc-AC130352.1-2:10
5.0 lnc-AC130352.1-2:10
5.1 lnc-DEFB106A-82:9
5.2 lnc-ZNF705D-2:28