Transcript: lnc-ZNF727-5:1

Basic information

LNCipedia transcript ID: lnc-ZNF727-5:1 
LNCipedia gene ID: lnc-ZNF727-5
Location (hg19): chr7:63580809-63611099
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434932.1; RP11-321E8.3-001; OTTHUMT00000344314.1; NONHSAT120985
Alternative gene names: ENSG00000244008.1; RP11-321E8.3; OTTHUMG00000156483.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5484 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF727-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF727-5:1
4.0 lnc-ZNF727-5:1
4.1 lnc-ZNF727-5:1
5.0 lnc-ZNF727-5:1
5.1 lnc-TPST1-66:1
5.2 lnc-ZNF727-5:1