Transcript: lnc-ZNF804A-1:3

Basic information

LNCipedia transcript ID: lnc-ZNF804A-1:3 
LNCipedia gene ID: lnc-ZNF804A-1
Location (hg19): chr2:186031549-186085058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 633 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003963; NONHSAT075958
Alternative gene names: XLOC_001780; linc-FSIP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.2 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF804A-1:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF804A-1:3
3.1 lnc-ZNF804A-1:3
4.0 lnc-ZNF804A-1:3
4.1 lnc-ZNF804A-1:3
5.0 lnc-ZNF804A-1:3
5.1 lnc-ITGAV-12:4
5.2 lnc-ZNF804A-1:3