Transcript: lnc-ZPR1-1:1

Basic information

LNCipedia transcript ID: lnc-ZPR1-1:1 
LNCipedia gene ID: lnc-ZPR1-1
Location (hg19): chr11:116645826-116646592
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 598 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00019175; ENST00000366405; ENST00000366405.2; AP006216.11-001; OTTHUMT00000315778.2; NONHSAT024354
Alternative gene names: XLOC_009566; linc-BUD13; ENSG00000231611; AP006216.11; ENSG00000231611.1; OTTHUMG00000150016.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.3252 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZPR1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF259-1:1
3.1 lnc-ZNF259-1:1
4.0 lnc-BUD13-1:2
4.1 lnc-BUD13-1:2
5.0 lnc-BUD13-1:2
5.1 lnc-SCN4B-43:1
5.2 lnc-ZPR1-1:1