Transcript: lnc-ZSCAN1-3:3

Basic information

LNCipedia transcript ID: lnc-ZSCAN1-3:3 
LNCipedia gene ID: lnc-ZSCAN1-3
Ensembl Gene ID: ENSG00000176593
Ensembl Transcript ID: ENST00000550135
Location (hg19): chr19:58513429-58522600
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6438 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550135.5
Alternative gene names: ENSG00000176593.7; CTD-2368P22.1; AC008969.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 88.4518 coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZSCAN1-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-2368P22.1.1-3:1
4.1 lnc-CTD-2368P22.1.1-3:1
5.0 lnc-CTD-2368P22.1.1-3:1
5.1 lnc-ZNF587B-9:1
5.2 lnc-ZSCAN1-3:3