Transcript: lnc-ZSCAN1-3:5

Basic information

LNCipedia transcript ID: lnc-ZSCAN1-3:5 
LNCipedia gene ID: lnc-ZSCAN1-3
Ensembl Gene ID: ENSG00000176593
Ensembl Transcript ID: ENST00000313957
RefSeq ID: NR_036508
Location (hg19): chr19:58514262-58518574
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1897 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_036508; ENST00000313957.7; NR_036508.1
Alternative gene names: ENSG00000176593.7; CTD-2368P22.1; AC008969.1; LOC100128398


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.7526 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN1-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN1-3:1
4.0 lnc-CTD-2368P22.1.1-3:3
4.1 lnc-CTD-2368P22.1.1-3:3
5.0 lnc-CTD-2368P22.1.1-3:3
5.1 lnc-ZNF587B-9:3
5.2 lnc-ZSCAN1-3:5