Transcript: lnc-ZSCAN1-3:6

Basic information

LNCipedia transcript ID: lnc-ZSCAN1-3:6 
LNCipedia gene ID: lnc-ZSCAN1-3
Ensembl Gene ID: ENSG00000176593
Ensembl Transcript ID: ENST00000546956
Location (hg19): chr19:58514270-58515529
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1096 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068301; ENST00000546956.1
Alternative gene names: ENSG00000176593.7; CTD-2368P22.1; AC008969.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.0276 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN1-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN1-3:2
4.0 lnc-CTD-2368P22.1.1-3:4
4.1 lnc-CTD-2368P22.1.1-3:4
5.0 lnc-CTD-2368P22.1.1-3:4
5.1 lnc-ZNF587B-9:4
5.2 lnc-ZSCAN1-3:6