Transcript: lnc-ZSCAN10-3:25

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:25 
LNCipedia gene ID: lnc-ZSCAN10-3
Location (hg19): chr16:3175825-3184864
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1140 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA511:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.583 non-coding 
CPAT coding probability 14.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:25 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZSCAN10-3:25
4.1 lnc-ZSCAN10-3:25
5.0 lnc-ZSCAN10-3:25
5.1 lnc-PKMYT1-20:6
5.2 lnc-ZSCAN10-3:25