Transcript: lnc-ZSCAN10-3:28

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:28 
HGNC Gene Symbol: lnc-ZSCAN10-3    
HGNC Full Gene Name: ZNF205 antisense RNA 1
RefSeq ID: NR_024166
Location (hg19): chr16:3160461-3165599
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1219 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000572691.1; RP11-473M20.15-001; OTTHUMT00000437319.1; NONHSAT147960; NR_024166; NR_024166.1
Alternative gene names: ENSG00000263214.1; RP11-473M20.15; OTTHUMG00000177517.1; ZNF205-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.7467 non-coding 
CPAT coding probability 7.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:28 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN10-2:2
4.0 lnc-ZSCAN10-3:28
4.1 lnc-ZSCAN10-3:28
5.0 lnc-ZSCAN10-3:28
5.1 lnc-PKMYT1-20:43
5.2 lnc-ZSCAN10-3:28