Transcript: lnc-ZSCAN10-3:7

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:7 
LNCipedia gene ID: lnc-ZSCAN10-3
Location (hg19): chr16:3178837-3182043
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1114 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000501618
Alternative gene names: ENSG00000245923; AC108134.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.583 non-coding 
CPAT coding probability 14.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZSCAN10-2:1
3.1 lnc-ZSCAN10-3:7
4.0 lnc-ZSCAN10-3:7
4.1 lnc-ZSCAN10-3:7
5.0 lnc-ZSCAN10-3:7
5.1 lnc-PKMYT1-20:27
5.2 lnc-ZSCAN10-3:7