Transcript: lnc-ZSCAN23-3:3

Basic information

LNCipedia transcript ID: lnc-ZSCAN23-3:3 
LNCipedia gene ID: lnc-ZSCAN23-3
Location (hg19): chr6:28452583-28457267
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4685 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087927.1|ENCT00000383327.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.5121 non-coding 
CPAT coding probability 8.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN23-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZSCAN23-3:3
5.0 lnc-ZSCAN23-3:3
5.1 lnc-SFTA2-70:4
5.2 lnc-ZSCAN23-3:3