Transcript: lnc-ZSCAN30-6:1

Basic information

LNCipedia transcript ID: lnc-ZSCAN30-6:1 
LNCipedia gene ID: lnc-ZSCAN30-6
Ensembl Gene ID: ENSG00000268873
Ensembl Transcript ID: ENST00000596954
Location (hg19): chr18:32317759-32347627
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT058892; ENST00000596954.1
Alternative gene names: ENSG00000268873.1; RP11-138H11.1; AC022601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.039 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN30-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN30-6:1
4.0 lnc-ZSCAN30-6:1
4.1 lnc-ZSCAN30-6:1
5.0 lnc-ZSCAN30-6:1
5.1 lnc-SMAD2-103:1
5.2 lnc-ZSCAN30-6:1