Transcript: lnc-ZSCAN30-6:2

Basic information

LNCipedia transcript ID: lnc-ZSCAN30-6:2 
LNCipedia gene ID: lnc-ZSCAN30-6
Location (hg19): chr18:32317759-32347627
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268873.1|ENST00000596954.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -121.039 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN30-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZSCAN30-6:2
5.0 lnc-ZSCAN30-6:2
5.1 lnc-SMAD2-103:2
5.2 lnc-ZSCAN30-6:2