Gene: FIRRE
Basic information
LNCipedia gene ID: FIRRE
Location (hg19): chrX:130823765-130964671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 22
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| FIRRE:1 | chrX:130836678-130964671 | 2928 bp |
| FIRRE:10 | chrX:130889639-130964632 | 1398 bp |
| FIRRE:11 | chrX:130835417-130964632 | 3948 bp |
| FIRRE:12 | chrX:130835417-130964632 | 8415 bp |
| FIRRE:13 | chrX:130845758-130964632 | 1568 bp |
| FIRRE:14 | chrX:130918530-130964632 | 3185 bp |
| FIRRE:15 | chrX:130836678-130964632 | 2889 bp |
| FIRRE:16 | chrX:130883430-130928495 | 381 bp |
| FIRRE:17 | chrX:130883332-130928495 | 628 bp |
| FIRRE:18 | chrX:130889599-130928495 | 853 bp |
| FIRRE:19 | chrX:130895963-130928495 | 515 bp |
| FIRRE:2 | chrX:130845679-130964671 | 1662 bp |
| FIRRE:20 | chrX:130883378-130928495 | 429 bp |
| FIRRE:21 | chrX:130825558-130889694 | 1635 bp |
| FIRRE:22 | chrX:130836680-130964671 | 2926 bp |
| FIRRE:3 | chrX:130928299-130964671 | 2625 bp |
| FIRRE:4 | chrX:130929685-130930195 | 511 bp |
| FIRRE:5 | chrX:130890639-130919294 | 510 bp |
| FIRRE:6 | chrX:130902595-130918043 | 259 bp |
| FIRRE:7 | chrX:130823765-130889773 | 3137 bp |
| FIRRE:8 | chrX:130877137-130889771 | 439 bp |
| FIRRE:9 | chrX:130823930-130826881 | 524 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| FIRRE | no | no | no | no |
Available literature
- Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
- Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
- Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
- Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
- Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
- Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.