Transcript: FIRRE:21

Basic information

LNCipedia transcript ID: FIRRE:21 
HGNC Gene Symbol: FIRRE    
HGNC Full Gene Name: firre intergenic repeating RNA element
Ensembl Gene ID: ENSG00000213468
Ensembl Transcript ID: ENST00000637577
Location (hg19): chrX:130825558-130889694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1635 bp
Exons: 6
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637577.1
Alternative gene names: ENSG00000213468.4; FIRRE; LINC01200; ENSG00000213468.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.7939 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FIRRE:21 no no no no

Available literature

  1. Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
  2. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  3. Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
  4. Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
  5. Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
  6. Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FIRRE:21
5.0 FIRRE:21
5.1 FIRRE:21
5.2 FIRRE:21