Gene: PCAT1

Basic information

LNCipedia gene ID: PCAT1 
Location (hg19): chr8:127570003-128431295
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA_gene
Transcripts: 48

Transcripts

Transcript IDLocation (hg19)Length
PCAT1:1 chr8:127850793-127890710 236 bp
PCAT1:2 chr8:127859300-128025958 734 bp
PCAT1:22 chr8:127570138-128305107 906 bp
PCAT1:24 chr8:127570157-127647232 562 bp
PCAT1:27 chr8:127725579-128305096 1231 bp
PCAT1:28 chr8:127725899-128077145 1057 bp
PCAT1:29 chr8:127836150-128020168 1530 bp
PCAT1:3 chr8:127889400-127890077 251 bp
PCAT1:30 chr8:127859288-127861633 484 bp
PCAT1:31 chr8:127859297-128025958 737 bp
PCAT1:32 chr8:127859326-127861801 471 bp
PCAT1:33 chr8:127878153-128077146 1565 bp
PCAT1:34 chr8:127889136-128411456 1538 bp
PCAT1:35 chr8:127889136-128025865 961 bp
PCAT1:36 chr8:127890717-128032669 1326 bp
PCAT1:37 chr8:127939522-128032575 1280 bp
PCAT1:38 chr8:127985480-128077140 1063 bp
PCAT1:39 chr8:127998209-128032668 1402 bp
PCAT1:4 chr8:128025399-128033259 1992 bp
PCAT1:40 chr8:128003056-128077136 969 bp
PCAT1:41 chr8:128003086-128063500 528 bp
PCAT1:42 chr8:128021773-128032669 823 bp
PCAT1:44 chr8:128256882-128386425 662 bp
PCAT1:45 chr8:128305057-128351680 770 bp
PCAT1:46 chr8:128334449-128352962 1460 bp
PCAT1:47 chr8:128334449-128358919 1101 bp
PCAT1:48 chr8:128334450-128431295 1562 bp
PCAT1:49 chr8:128351392-128404879 420 bp
PCAT1:5 chr8:127889136-128196619 2054 bp
PCAT1:51 chr8:128351525-128427267 696 bp
PCAT1:52 chr8:128351526-128406980 583 bp
PCAT1:53 chr8:127570003-127630713 1353 bp
PCAT1:54 chr8:127570003-127726021 764 bp
PCAT1:55 chr8:127570003-127647253 737 bp
PCAT1:56 chr8:127570120-127725660 574 bp
PCAT1:57 chr8:127570121-127629986 508 bp
PCAT1:58 chr8:127570121-127630141 564 bp
PCAT1:59 chr8:127570121-127688658 391 bp
PCAT1:6 chr8:128196162-128215640 16542 bp
PCAT1:60 chr8:127570121-127725660 573 bp
PCAT1:61 chr8:127570121-127726222 1017 bp
PCAT1:62 chr8:127570121-127726222 748 bp
PCAT1:63 chr8:127570131-127629986 498 bp
PCAT1:64 chr8:127570140-127688658 372 bp
PCAT1:65 chr8:127601459-127647029 317 bp
PCAT1:66 chr8:127604518-127607074 632 bp
PCAT1:67 chr8:128256882-128404876 585 bp
PCAT1:68 chr8:128351519-128404876 290 bp


Locus conservation

Locus conservation?
PCAT1 no no no no

Available literature

  1. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  2. Kim (2015), Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs., PLoS ONE
  3. Liu (2015), Inducing cell growth arrest and apoptosis by silencing long non-coding RNA PCAT-1 in human bladder cancer., Tumour Biol.
  4. Rupaimoole (2015), Long Noncoding RNA Ceruloplasmin Promotes Cancer Growth by Altering Glycolysis., Cell Rep
  5. Shi (2015), Upregulation of the long noncoding RNA PCAT-1 correlates with advanced clinical stage and poor prognosis in esophageal squamous carcinoma., Tumour Biol.
  6. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  7. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Yan (2015), Prognostic significance of long non-coding RNA PCAT-1 expression in human hepatocellular carcinoma., Int J Clin Exp Pathol
  11. Athie (2014), FAL1ing inside an amplicon., Cancer Cell
  12. Hu (2014), A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer., Cancer Cell
  13. Mehra (2014), A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer., Neoplasia
  14. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  15. Prensner (2014), PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer., Cancer Res.
  16. Prensner (2014), The long non-coding RNA PCAT-1 promotes prostate cancer cell proliferation through cMyc., Neoplasia
  17. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  18. Walsh (2014), Long noncoding RNAs and prostate carcinogenesis: the missing 'linc'?, Trends Mol Med
  19. Xu (2014), Long non-coding RNA LSINCT5 predicts negative prognosis and exhibits oncogenic activity in gastric cancer., Medicine (Baltimore)
  20. Cao (2013), Integrated analysis of long noncoding RNA and coding RNA expression in esophageal squamous cell carcinoma., Int J Genomics
  21. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.
  22. Ge (2013), Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer., Med. Oncol.
  23. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  24. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.
  25. Kelley (2012), Transposable elements reveal a stem cell-specific class of long noncoding RNAs., Genome Biol.
  26. Prensner (2011), Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression., Nat. Biotechnol.