Transcript: PCAT1:67

Basic information

LNCipedia transcript ID: PCAT1:67 
LNCipedia gene ID: PCAT1
RefSeq ID: NR_117099
Location (hg19): chr8:128256882-128404876
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 585 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_117099; NR_117099.1
Alternative gene names: CARLo-2; CASC21


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.6314 non-coding 
CPAT coding probability 3.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT1:67 no no no no

Available literature

  1. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  2. Kim (2015), Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs., PLoS ONE
  3. Liu (2015), Inducing cell growth arrest and apoptosis by silencing long non-coding RNA PCAT-1 in human bladder cancer., Tumour Biol.
  4. Rupaimoole (2015), Long Noncoding RNA Ceruloplasmin Promotes Cancer Growth by Altering Glycolysis., Cell Rep
  5. Shi (2015), Upregulation of the long noncoding RNA PCAT-1 correlates with advanced clinical stage and poor prognosis in esophageal squamous carcinoma., Tumour Biol.
  6. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  7. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Yan (2015), Prognostic significance of long non-coding RNA PCAT-1 expression in human hepatocellular carcinoma., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POU5F1B-1:2
4.0 CASC21:1
4.1 CASC21:1
5.0 CASC21:1
5.1 PCAT1:43
5.2 PCAT1:67

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