Transcript: CARMN:10
Basic information
LNCipedia transcript ID: CARMN:10
LNCipedia gene ID: CARMN
Location (hg19): chr5:148786441-148805957
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3148 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000505254; TCONS_00009539; ENST00000505254.1; MIR143HG-001; OTTHUMT00000373587.1
Alternative gene names: ENSG00000249669; XLOC_004598; linc-ARHGEF37-2; RP11-394O4.2; ENSG00000249669.2; MIR143HG; OTTHUMG00000163464.3; CARMEN
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
CARMN:10 | no | no | no | no |
Available literature
- Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
- Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
- Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
1.3 | lnc-PCYOX1L-1:4 |
3.1 | lnc-PCYOX1L-2:3 |
4.0 | CARMN:10 |
4.1 | CARMN:10 |
5.0 | CARMN:10 |
5.1 | CARMN:10 |
5.2 | CARMN:10 |