Transcript: CARMN:11

Basic information

LNCipedia transcript ID: CARMN:11 
HGNC Gene Symbol: CARMN    
HGNC Full Gene Name: cardiac mesoderm enhancer-associated non-coding RNA
Ensembl Gene ID: ENSG00000249669
Ensembl Transcript ID: ENST00000505254
Location (hg19): chr5:148786441-148808237
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3950 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT104494; ENST00000505254.2; ENST00000505254.6
Alternative gene names: ENSG00000249669.3; MIR143HG; ENSG00000249669.7; CARMEN; ENSG00000249669.8; CARMN; ENSG00000249669.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.0987 non-coding 
CPAT coding probability 10.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:11 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCYOX1L-2:19
4.0 CARMN:11
4.1 CARMN:11
5.0 CARMN:11
5.1 CARMN:11
5.2 CARMN:11