Transcript: CARMN:23

Basic information

LNCipedia transcript ID: CARMN:23 
LNCipedia gene ID: CARMN
Location (hg19): chr5:148800890-148806264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2312 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010137; NONHSAT104502
Alternative gene names: XLOC_004598; linc-ARHGEF37-2; CARMEN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.0987 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:23 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCYOX1L-1:13
3.1 lnc-PCYOX1L-2:13
4.0 CARMN:23
4.1 CARMN:23
5.0 CARMN:23
5.1 CARMN:23
5.2 CARMN:23