Transcript: CARMN:3

Basic information

LNCipedia transcript ID: CARMN:3 
LNCipedia gene ID: CARMN
RefSeq ID: NR_105060
Location (hg19): chr5:148786408-148812399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 939 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105060; NR_105060.1
Alternative gene names: CARMEN; CARMN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.8169 non-coding 
CPAT coding probability 6.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:3 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCYOX1L-2:15
4.0 CARMN:3
4.1 CARMN:3
5.0 CARMN:3
5.1 CARMN:3
5.2 CARMN:3