Transcript: CARMN:9

Basic information

LNCipedia transcript ID: CARMN:9 
HGNC Gene Symbol: CARMN    
HGNC Full Gene Name: cardiac mesoderm enhancer-associated non-coding RNA
Ensembl Gene ID: ENSG00000249669
Ensembl Transcript ID: ENST00000523269
Location (hg19): chr5:148786441-148801189
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523269; ENST00000523269.1; MIR143HG-006; OTTHUMT00000381676.1; NONHSAT104495; ENST00000523269.5
Alternative gene names: ENSG00000249669; RP11-394O4.2; ENSG00000249669.2; MIR143HG; OTTHUMG00000163464.3; ENSG00000249669.3; ENSG00000249669.7; CARMEN; ENSG00000249669.8; CARMN; ENSG00000249669.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.8169 non-coding 
CPAT coding probability 21.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARMN:9 no no no no

Available literature

  1. Du (2016), Negative feedback circuitry between MIR143HG and RBM24 in Hirschsprung disease., Biochim. Biophys. Acta
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  3. Ounzain (2015), CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis., J. Mol. Cell. Cardiol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCYOX1L-1:3
3.1 lnc-PCYOX1L-2:4
4.0 CARMN:9
4.1 CARMN:9
5.0 CARMN:9
5.1 CARMN:9
5.2 CARMN:9