Transcript: FTX:14
Basic information
LNCipedia transcript ID: FTX:14
HGNC Gene Symbol: FTX
HGNC Full Gene Name:
FTX transcript, XIST regulator
Ensembl Gene ID:
ENSG00000230590
Ensembl Transcript ID:
ENST00000455395
Location (hg19): chrX:73500296-73511910
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 654 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455395; ENST00000455395.1; FTX-004; OTTHUMT00000057258.1; NONHSAT137629; ENST00000455395.5
Alternative gene names: ENSG00000230590; FTX; ENSG00000230590.1; OTTHUMG00000021850.1; ENSG00000230590.3; ENSG00000230590.7; LINC00182; FLJ33139; ENSG00000230590.9
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
FTX:14 | no | no | no | no |
Available literature
- Caudron-Herger (2015), Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories., Nucleic Acids Res.
- Guo (2015), Biological significance of long non-coding RNA FTX expression in human colorectal cancer., Int J Clin Exp Med
- Reiche (2014), Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes., PLoS ONE
- Soma (2014), Ftx is dispensable for imprinted X-chromosome inactivation in preimplantation mouse embryos., Sci Rep
- Yoon (2014), PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity., Nat Commun
- Zhao (2014), The miR-545/374a cluster encoded in the Ftx lncRNA is overexpressed in HBV-related hepatocellular carcinoma and promotes tumorigenesis and tumor progression., PLoS ONE
- Chureau (2011), Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region., Hum. Mol. Genet.
- Payer (2011), X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells., Hum. Genet.
- Kolesnikov (2010), [Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and mouse]., Genetika
- Chureau (2002), Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine., Genome Res.
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
1.3 | lnc-RLIM-2:4 |
3.1 | lnc-RLIM-2:4 |
4.0 | FTX:14 |
4.1 | FTX:14 |
5.0 | FTX:14 |
5.1 | FTX:14 |
5.2 | FTX:14 |