Transcript: HCG15:11

Basic information

LNCipedia transcript ID: HCG15:11 
HGNC Gene Symbol: HCG15    
HGNC Full Gene Name: HLA complex group 15
Ensembl Gene ID: ENSG00000227214
Ensembl Transcript ID: ENST00000438190
Location (hg19): chr6:28953980-28955261
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1032 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438190.1; HCG15-001; OTTHUMT00000076582.1; NONHSAT108501
Alternative gene names: ENSG00000227214.2; HCG15; OTTHUMG00000031267.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.4718 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG15:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf100-3:1
4.0 lnc-C6orf100-3:1
4.1 lnc-C6orf100-3:1
5.0 lnc-C6orf100-3:1
5.1 HCG15:6
5.2 HCG15:11