Transcript: HCG15:12

Basic information

LNCipedia transcript ID: HCG15:12 
LNCipedia gene ID: HCG15
Ensembl Gene ID: ENSG00000244349
Ensembl Transcript ID: ENST00000445544
Location (hg19): chr6:28954577-28956313
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 317 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445544.1; HCG16-001; OTTHUMT00000076588.1; NONHSAT108502
Alternative gene names: ENSG00000244349.1; HCG16; OTTHUMG00000031270.1; AL662791.4; AL662791.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG15:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf100-3:2
4.0 lnc-C6orf100-3:2
4.1 lnc-C6orf100-3:2
5.0 lnc-C6orf100-3:2
5.1 HCG15:7
5.2 HCG15:12