Transcript: HCG23:19

Basic information

LNCipedia transcript ID: HCG23:19 
LNCipedia gene ID: HCG23
Ensembl Gene ID: ENSG00000225914
Ensembl Transcript ID: ENST00000425033
Location (hg19): chr6:32223488-32233615
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3458 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425033.1; XXbac-BPG154L12.4-001; OTTHUMT00000316882.1; NONHSAT108899
Alternative gene names: ENSG00000225914.1; XXbac-BPG154L12.4; OTTHUMG00000150222.1; AL671511.1; ENSG00000225914.2; HCG23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.436 non-coding 
CPAT coding probability 36.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG23:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF5-1:1
4.0 lnc-RNF5-1:1
4.1 lnc-RNF5-1:1
5.0 lnc-RNF5-1:1
5.1 HCG23:14
5.2 HCG23:19