Transcript: HORMAD2-AS1:14

Basic information

LNCipedia transcript ID: HORMAD2-AS1:14 
LNCipedia gene ID: HORMAD2-AS1
Location (hg19): chr22:30442265-30443182
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 918 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT084755
Alternative gene names: MTMR3-AS1; NONHSAG033653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 90.5021 coding 
CPAT coding probability 89.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HORMAD2-AS1:14 no no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIF-5:1
4.0 lnc-LIF-5:1
4.1 HORMAD2-AS1:14
5.0 HORMAD2-AS1:14
5.1 HORMAD2-AS1:14
5.2 HORMAD2-AS1:14