Transcript: HORMAD2-AS1:4

Basic information

LNCipedia transcript ID: HORMAD2-AS1:4 
LNCipedia gene ID: HORMAD2-AS1
RefSeq ID: NR_110541
Location (hg19): chr22:30404731-30476469
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1152 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110541; NR_110541.1
Alternative gene names: MTMR3-AS1; NONHSAG033653; HORMAD2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.2219 non-coding 
CPAT coding probability 36.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HORMAD2-AS1:4 no no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIF-2:6
4.0 HORMAD2-AS1:4
4.1 HORMAD2-AS1:4
5.0 HORMAD2-AS1:4
5.1 HORMAD2-AS1:4
5.2 HORMAD2-AS1:4