Transcript: LINC00472:2

Basic information

LNCipedia transcript ID: LINC00472:2 
LNCipedia gene ID: LINC00472
Location (hg19): chr6:72123954-72130506
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3171 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012211; NONHSAT113507
Alternative gene names: XLOC_005764; linc-B3GAT2-4; dJ288M22.3; FLJ13189


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.0632 non-coding 
CPAT coding probability 26.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00472:2 no no no no

Available literature

  1. Permuth (2017), Linc-ing Circulating Long Non-coding RNAs to the Diagnosis and Malignant Prediction of Intraductal Papillary Mucinous Neoplasms of the Pancreas., Sci Rep
  2. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  3. Dhir (2015), Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs., Nat. Struct. Mol. Biol.
  4. Shen (2015), Prognostic and predictive values of long non-coding RNA LINC00472 in breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-B3GAT2-2:2
3.1 lnc-B3GAT2-3:2
4.0 LINC00472:2
4.1 LINC00472:2
5.0 LINC00472:2
5.1 LINC00472:2
5.2 LINC00472:2