Transcript: LINC01410:1

Basic information

LNCipedia transcript ID: LINC01410:1 
HGNC Gene Symbol: LINC01410    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1410
Ensembl Gene ID: ENSG00000238113
Ensembl Transcript ID: ENST00000427509
Location (hg19): chr9:66457285-66466010
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 647 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427509; ENST00000427509.1; RP11-262H14.1-003; OTTHUMT00000037071.1; ENST00000427509.5
Alternative gene names: ENSG00000238113; RP11-262H14.1; ENSG00000238113.1; OTTHUMG00000013291.2; ENSG00000238113.2; ENSG00000238113.6; LINC01410;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.924 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.209453366
covF1Prop0.15625
seqAAMFSWMVLMLVDVLQCLDIKILGMQHHMRSLKNKI

In stringent set: no

Locus conservation

Locus conservation?
LINC01410:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-262H14.4.1-1:1
3.1 lnc-RP11-262H14.4.1-1:1
4.0 LINC01410:1
4.1 LINC01410:1
5.0 LINC01410:1
5.1 LINC01410:1
5.2 LINC01410:1