Transcript: LINGO1-AS1:5

Basic information

LNCipedia transcript ID: LINGO1-AS1:5 
LNCipedia gene ID: LINGO1-AS1
Location (hg19): chr15:77938650-77944620
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1335 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT047452
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.0994 non-coding 
CPAT coding probability 11.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINGO1-AS1:5 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-3:7
4.0 LINGO1-AS1:5
4.1 LINGO1-AS1:5
5.0 LINGO1-AS1:5
5.1 LINGO1-AS1:5
5.2 LINGO1-AS1:5