Transcript: LINGO1-AS1:7

Basic information

LNCipedia transcript ID: LINGO1-AS1:7 
LNCipedia gene ID: LINGO1-AS1
Location (hg19): chr15:77938684-77943997
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 491 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558887.1; RP11-307C19.3-002; OTTHUMT00000419533.1
Alternative gene names: ENSG00000259666.1; RP11-307C19.3; OTTHUMG00000172626.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -448.1309 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINGO1-AS1:7 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-3:3
4.0 LINGO1-AS1:7
4.1 LINGO1-AS1:7
5.0 LINGO1-AS1:7
5.1 LINGO1-AS1:7
5.2 LINGO1-AS1:7