Transcript: LINGO1-AS1:9

Basic information

LNCipedia transcript ID: LINGO1-AS1:9 
HGNC Gene Symbol: LINGO1-AS1    
HGNC Full Gene Name: LINGO1 antisense RNA 1
Ensembl Gene ID: ENSG00000259666
Ensembl Transcript ID: ENST00000560265
Location (hg19): chr15:77938700-77940543
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 335 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560265.1; RP11-307C19.3-003; OTTHUMT00000419534.1; NONHSAT047454
Alternative gene names: ENSG00000259666.1; RP11-307C19.3; OTTHUMG00000172626.1; ENSG00000259666.2; LINGO1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.6713 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINGO1-AS1:9 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-3:4
4.0 LINGO1-AS1:9
4.1 LINGO1-AS1:9
5.0 LINGO1-AS1:9
5.1 LINGO1-AS1:9
5.2 LINGO1-AS1:9