Transcript: LINGO1-AS2:4

Basic information

LNCipedia transcript ID: LINGO1-AS2:4 
HGNC Gene Symbol: LINGO1-AS2    
HGNC Full Gene Name: LINGO1 antisense RNA 2
Ensembl Gene ID: ENSG00000259281
Ensembl Transcript ID: ENST00000557799
Location (hg19): chr15:77952394-77960416
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 663 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557799.1; CTD-2632K10.1-001; OTTHUMT00000419535.1; NONHSAT047456
Alternative gene names: ENSG00000259281.1; CTD-2632K10.1; OTTHUMG00000172627.1; LINGO1-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.9604 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINGO1-AS2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-4:2
4.0 LINGO1-AS2:4
4.1 LINGO1-AS2:4
5.0 LINGO1-AS2:4
5.1 LINGO1-AS2:4
5.2 LINGO1-AS2:4